rbioapi 0.8.2 (Current CRAN version)
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Update functions to the latest corresponding API endpoints:
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Added STRING function:
rba_string_enrichment_image()
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Updated Enrichr function:
Added option to supply background genes
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Updated PANTHER function:
added option to supply data frame to the enrichment/over-representation function.
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Added UniProt functions:
rba_uniprot_epitope(), rba_uniprot_epitope_search(), rba_uniprot_coordinates_location_genome(), rba_uniprot_proteomics_hpp(), rba_uniprot_proteomics_hpp_search(), rba_uniprot_proteomics_non_ptm(), rba_uniprot_proteomics_non_ptm_search(), rba_uniprot_proteomics_ptm(), rba_uniprot_proteomics_ptm_search(), rba_uniprot_proteomics_species(), rba_uniprot_rna_edit(), rba_uniprot_rna_edit_search()
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Deprecated UniProt functions:
rba_uniprot_proteomics(), rba_uniprot_proteomics_search(), rba_uniprot_ptm(), rba_uniprot_ptm_search()
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New arguments added to existing UniProt functions:
rba_uniprot_features_search(), rba_uniprot_coordinates_location_protein(), rba_uniprot_features()
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All scripts were reformatted to enhance readability.
Minor improvements and fixes.
rbioapi 0.8.0
CRAN release: 2023-09-30
Move to STRING v12.
Incorporate the recent changes in PANTHER and MIEAA API.
Minor improvements and fixes.
rbioapi 0.7.6
CRAN release: 2022-04-05
Submitted the paper to Bioinformatics journal (DOI: 10.1093/bioinformatics/btac172).
Added vignette article: “Over-Representation (Enrichment) Analysis””
Updated citations information.
Moved to JASPAR 2022.
Added new API endpoints of UniProt and PANTHER.
Minor internal improvements.