Get PANTHER Families and Sub-FamiliesSource:
Using this function, you can retrieve Orthologs, MSA or Tree topology information of a given PANTHER family.
Panther family id.
What to retrieve? One of:
"ortholog": Orthologs ('LDO' for least diverged and 'O' for more diverged).
"msa": Multiple Sequence Alignment Information,
"tree": Tree topology and nodes attributes.
(numeric) NCBI taxon ID(s) to filter the results. run
rba_panther_infowith argument 'what = "organisms"' to get a list of PANTHER's supported organisms.
rbioapi option(s). See
rba_options's arguments manual for more information on available options.
Huaiyu Mi, Dustin Ebert, Anushya Muruganujan, Caitlin Mills, Laurent-Philippe Albou, Tremayne Mushayamaha, Paul D Thomas, PANTHER version 16: a revised family classification, tree-based classification tool, enhancer regions and extensive API, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D394–D403, https://doi.org/10.1093/nar/gkaa1106