This function Retrieve a list of all diseases or disease DOIDs annotated in Reactome.

rba_reactome_diseases(doid = FALSE, ...)

Arguments

doid

(logical) Return disease DOIDs instead of diseases? (default = FALSE)

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

Data frame containing all the disease annotation available at Reactome. If doid was set to TRUE, DOID info will be returned instead.

Corresponding API Resources

"GET https://reactome.org/ContentService/GET data/diseases" "GET https://reactome.org/ContentService/GET data/diseases/doid"

References

  • Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, Sidiropoulos K, Cook J, Gillespie M, Haw R, Loney F, May B, Milacic M, Rothfels K, Sevilla C, Shamovsky V, Shorser S, Varusai T, Weiser J, Wu G, Stein L, Hermjakob H, D'Eustachio P. The reactome pathway knowledgebase. Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031. PubMed PMID: 31691815.

  • Reactome Content Services API Documentation

Examples

# \donttest{
rba_reactome_diseases()
# }
# \donttest{
rba_reactome_diseases(doid = TRUE)
# }