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Exports A Reactome Event to SBGN or SBML

Source: R/reactome_content.R
rba_reactome_exporter_event.Rd

This function will export a supplied Reactome Event (Pathway or Reaction) to a SBGN (Systems Biology Graphical Notation) or SBML (Systems Biology Markup Language)

Usage

rba_reactome_exporter_event(event_id, output_format, save_to = NULL, ...)

Arguments

event_id

Character: Reactome event's database IDs (DbId) or Stable IDs (StId).

output_format

Character: Either "sbgn" or "sbml".

save_to

NULL or Character: (default = NULL)

  • NULL: Save the file to an automatically-generated path.

  • Character string: A valid file path to save the file to.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

NULL, According to the inputs, a SBGN or SBML file will be saved to disk.

Corresponding API Resources

"GET https://reactome.org/ContentService/exporter/event/ {identifier}.sbgn"
"GET https://reactome.org/ContentService/exporter/event/ {identifier}.sbml"

References

  • Ragueneau, E., Gong, C., Sinquin, P., Sevilla, C., Beavers, D., Grentner, A., ... D’Eustachio, P. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Res., 54(D1), D673–D681. doi: 10.1093/nar/gkaf1223

  • Griss, J., Viteri, G., Sidiropoulos, K., Nguyen, V., Fabregat, A., & Hermjakob, H. (2020). ReactomeGSA—Efficient Multi-Omics Comparative Pathway Analysis. Molecular & Cellular Proteomics, 19(12), 2115–2125. doi: 10.1074/mcp.TIR120.002155

  • Reactome Content Services API Documentation

  • Citations note on Reactome website

See also

Other "Reactome Content Service - Format Exporter": rba_reactome_exporter_diagram(), rba_reactome_exporter_overview(), rba_reactome_exporter_reaction()

Examples

if (FALSE) { # \dontrun{
rba_reactome_exporter_event(event_id = "R-HSA-177929",
    output_format = "sbgn",
    save_to = "R-HSA-177929.sbgn")
} # }
if (FALSE) { # \dontrun{
rba_reactome_exporter_event(event_id = "R-HSA-177929",
    output_format = "sbgn")
} # }