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Query and Retrieve any Reactome knowledge-base Object

Source: R/reactome_content.R
rba_reactome_query.Rd

Using this Comprehensive function, You can Retrieve any object from Reactome knowledge-base

Usage

rba_reactome_query(
  ids,
  enhanced = FALSE,
  map = FALSE,
  attribute_name = NULL,
  ...
)

Arguments

ids

Character or Numeric vector: A single or Multiple database IDs (DbId), Stable IDs (StId) or a mixture of both.

enhanced

Logical: (default = FALSE) If 'TRUE' more information on the supplied entry will be returned. (You can set this argument to 'TRUE' Only when you supply a single ID).

map

Logical: (default = FALSE) Should the supplied IDs be mapped? This argument will only be considered when you supply multiple IDs. (e.g. when you supply previous version of stable identifiers.)

attribute_name

Character: (optional) Only Return an Attribute of the supplied Database Object. (You can use this argument Only when you supply a single ID)

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

List containing your query outputs.

Corresponding API Resources

"POST https://reactome.org/ContentService/data/query/ids"
"POST https://reactome.org/ContentService/data/query/ids/map"
"GET https://reactome.org/ContentService/data/query/{id}"
"GET https://reactome.org/ContentService/data/query/enhanced/{id}"
"GET https://reactome.org/ContentService/data/query/{id}/{attributeName}"

References

  • Ragueneau, E., Gong, C., Sinquin, P., Sevilla, C., Beavers, D., Grentner, A., ... D’Eustachio, P. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Res., 54(D1), D673–D681. doi: 10.1093/nar/gkaf1223

  • Griss J, Viteri G, Sidiropoulos K, Nguyen V, Fabregat A, Hermjakob H. ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis. Mol Cell Proteomics. 2020 Sep 9. doi: 10.1074/mcp. PubMed PMID: 32907876.

  • Reactome Content Services API Documentation

  • Citations note on Reactome website

Examples

# \donttest{
rba_reactome_query(ids = c("8953958", "11982506", "R-ALL-9649879"))
# }
# \donttest{
rba_reactome_query(ids = "R-HSA-9656256", enhanced = TRUE)
# }
# \donttest{
rba_reactome_query(ids = "8863054", attribute_name = "displayName")
# }