This function Calls STRING's API to Convert a set of identifiers to STRING Identifiers. Although You can call STRING services with a variety of common identifiers, It is recommended by STRING's documentations that you first map Your Protein/genes IDs to STRING IDs and then proceed with other STRING's functions.
rba_string_map_ids(ids, species = NULL, echo_query = FALSE, limit = NULL, ...)
| ids | Your Common gene/protein Identifier(s) to be mapped. |
|---|---|
| species | Numeric: NCBI Taxonomy identifier; Human Taxonomy ID is 9606. (Recommended, but optional if your input is less than 100 IDs.) |
| echo_query | (default = FALSE) Include your input IDs as a column of the results. |
| limit | (Numeric, Optional) A limit on the number of matches per input ID. |
| ... | rbioapi option(s). See |
A data frame with the mapped STRING IDs and other pertinent information.
"POST https://string-db.org/api/[output-format]/get_string_ids?identifiers= [your_identifiers]&[optional_parameters]"
Szklarczyk D, Gable AL, Lyon D, Junge A, Wyder S, Huerta-Cepas J, Simonovic M, Doncheva NT, Morris JH, Bork P, Jensen LJ, Mering CV. STRING v11: protein-protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets. Nucleic Acids Res. 2019 Jan 8;47(D1):D607-D613. doi: 10.1093/nar/gky1131. PMID: 30476243; PMCID: PMC6323986.
Other "STRING":
rba_string_annotations(),
rba_string_enrichment_ppi(),
rba_string_enrichment(),
rba_string_homology_inter(),
rba_string_homology_intra(),
rba_string_interaction_partners(),
rba_string_interactions_network(),
rba_string_network_image(),
rba_string_version()
# \donttest{ rba_string_map_ids(ids = c("TP53", "TNF", "EGFR"), species = 9606) # }