This function Calls STRING's API to Convert a set of identifiers to STRING Identifiers. Although You can call STRING services with a variety of common identifiers, It is recommended by STRING's documentations that you first map Your Protein/genes IDs to STRING IDs and then proceed with other STRING's functions.
Arguments
- ids
Your Common gene/protein Identifier(s) to be mapped.
- species
Numeric: NCBI Taxonomy identifier; Human Taxonomy ID is 9606. (Recommended, but optional if your input is less than 100 IDs.)
- echo_query
(default = FALSE) Include your input IDs as a column of the results.
- limit
(Numeric, Optional) A limit on the number of matches per input ID.
- ...
rbioapi option(s). See
rba_options
's arguments manual for more information on available options.
Corresponding API Resources
"POST https://string-db.org/api/[output-format]/get_string_ids?identifiers= [your_identifiers]&[optional_parameters]"
References
Damian Szklarczyk, Annika L Gable, Katerina C Nastou, David Lyon, Rebecca Kirsch, Sampo Pyysalo, Nadezhda T Doncheva, Marc Legeay, Tao Fang, Peer Bork, Lars J Jensen, Christian von Mering, The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D605–D612, https://doi.org/10.1093/nar/gkaa1074
Examples
# \donttest{
rba_string_map_ids(ids = c("TP53", "TNF", "EGFR"), species = 9606)
# }