This function Calls STRING's API to Convert a set of identifiers to STRING Identifiers. Although You can call STRING services with a variety of common identifiers, It is recommended by STRING's documentations that you first map Your Protein/genes IDs to STRING IDs and then proceed with other STRING's functions.
Arguments
- ids
Your Common gene/protein Identifier(s) to be mapped.
- species
Numeric: NCBI Taxonomy identifier; Human Taxonomy ID is 9606. (Recommended, but optional if your input is less than 100 IDs.)
- echo_query
(default = FALSE) Include your input IDs as a column of the results.
- limit
(Numeric, Optional) A limit on the number of matches per input ID. The output are sorted to have the best matches first.
- ...
rbioapi option(s). See
rba_options's arguments manual for more information on available options.
Corresponding API Resources
"POST https://string-db.org/api/{output-format}/get_string_ids?identifiers= {your_identifiers}&{optional_parameters}"
References
Damian Szklarczyk, Rebecca Kirsch, Mikaela Koutrouli, Katerina Nastou, Farrokh Mehryary, Radja Hachilif, Annika L Gable, Tao Fang, Nadezhda T Doncheva, Sampo Pyysalo, Peer Bork, Lars J Jensen, Christian von Mering, The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest, Nucleic Acids Research, Volume 51, Issue D1, 6 January 2023, Pages D638–D646, https://doi.org/10.1093/nar/gkac1000
See also
Other "STRING":
rba_string_annotations(),
rba_string_enrichment(),
rba_string_enrichment_image(),
rba_string_enrichment_ppi(),
rba_string_homology_inter(),
rba_string_homology_intra(),
rba_string_interaction_partners(),
rba_string_interactions_network(),
rba_string_network_image(),
rba_string_version()
Examples
# \donttest{
rba_string_map_ids(ids = c("TP53", "TNF", "EGFR"), species = 9606)
# }