Using this function you can retrieve genomic Coordinates of a Protein by either providing the protein's UniProt accession or it's ID in a cross-reference database (Ensembl, CCDC, HGNC or RefSeq). You should supply either 'accession' alone or 'db_type' and 'db_id' together.
Arguments
- accession
- db_type
cross-reference database name, Should be one of: "Ensembl", "CCDC", "HGNC" or "RefSeq".
- db_id
Protein's ID in the cross-reference database
- ...
rbioapi option(s). See
rba_options
's arguments manual for more information on available options.
Details
For more information about how UniProt imports and calculates genomic
coordinates data, see:
McGarvey, P. B., Nightingale, A., Luo, J., Huang, H., Martin, M. J.,
Wu, C., & UniProt Consortium (2019). UniProt genomic mapping for
deciphering functional effects of missense variants. Human mutation,
40(6), 694–705. https://doi.org/10.1002/humu.23738
Corresponding API Resources
"GET https://ebi.ac.uk/proteins/api/coordinates/{accession}"
"GET https://ebi.ac.uk/proteins/api/coordinates/{dbtype}:{dbid}"
References
The UniProt Consortium , UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research, 2024;, gkae1010, https://doi.org/10.1093/nar/gkae1010
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
See also
Other "UniProt - Coordinates":
rba_uniprot_coordinates_location()
,
rba_uniprot_coordinates_location_genome()
,
rba_uniprot_coordinates_location_protein()
,
rba_uniprot_coordinates_search()