Use this function to search epitope data associated to UniProt entities, using various criteria such as UniProt accession, epitope sequence, IEDB ID, and match score.
Usage
rba_uniprot_epitope_search(
accession = NULL,
epitope_sequence = NULL,
iedb_id = NULL,
match_score = NULL,
...
)Arguments
- accession
UniProtKB primary or secondary accession(s). You can supply up to 100 accession numbers.
- epitope_sequence
(Character) Epitope's proteins sequence
- iedb_id
(Numeric) EIDB epitope Identifier(s). You can supply up to 20 accession numbers.
- match_score
Integer: Minimum alignment score for the antigen sequence and the target protein sequence.
- ...
rbioapi option(s). See
rba_options's arguments manual for more information on available options.
Value
A List where each element corresponds to one UniProt entity returned by your search query. The element itself is a sub-list containing all information that UniProt has about that entity.
See also
Other "UniProt - Epitopes":
rba_uniprot_epitope(),
rba_uniprot_rna_edit()
Examples
# \donttest{
rba_uniprot_epitope_search(accession = c("Q84ZX5", "P36222"))
# }
# \donttest{
rba_uniprot_epitope_search(epitope_sequence = "DKKCIEWEKAQHGA")
# }
# \donttest{
rba_uniprot_epitope_search(iedb_id = 20354)
# }