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Get Proteomics Peptides Mapped to UniProt Protein (Deprecated)

Source: R/deprecated_functions.R
rba_uniprot_proteomics.Rd

This function is Deprecated. Please use rba_uniprot_proteomics_non_ptm instead.
UniProt maps proteomics peptides from different sources to the proteins' sequences. Using this function, you can retrieve all the proteomics peptides features that has been map to a given UniProt protein's sequence.

Usage

rba_uniprot_proteomics(accession, ...)

Arguments

accession

Character: UniProtKB primary or secondary accession.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list containing the proteomics peptides features of your supplied UniProt protein's sequence.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/proteomics/nonPtm/{accession}"

References

  • The UniProt Consortium. (2025). UniProt: the Universal Protein Knowledgebase in 2025. Nucleic Acids Research, 53(D1), D609–D617. https://doi.org/10.1093/nar/gkae1010

  • Nightingale, A., Antunes, R., Alpi, E., Bursteinas, B., Gonzales, L., Liu, W., Luo, J., Qi, G., Turner, E., & Martin, M. (2017). The Proteins API: Accessing key integrated protein and genome information. Nucleic Acids Research, 45(W1), W539–W544. https://doi.org/10.1093/nar/gkx237

  • Proteins API Documentation

  • Citations note on UniProt website

See also

Other "Deprecated functions": rba_uniprot_proteomics_search(), rba_uniprot_ptm(), rba_uniprot_ptm_search()

Examples

if (FALSE) { # \dontrun{
#Deprecated
rba_uniprot_proteomics(accession = "P25942")
} # }