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Get Proteomics Peptides Mapped to UniProt Protein (Deprecated)

Source: R/deprecated_functions.R
rba_uniprot_proteomics.Rd

This function is Deprecated. Please use rba_uniprot_proteomics_non_ptm instead.
UniProt maps proteomics peptides from different sources to the proteins' sequences. Using this function, you can retrieve all the proteomics peptides features that has been map to a given UniProt protein's sequence.

Usage

rba_uniprot_proteomics(accession, ...)

Arguments

accession

UniProtKB primary or secondary accession.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list containing the proteomics peptides features of your supplied UniProt protein's sequence.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/proteomics/{accession}"

References

  • The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100

  • Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

  • Proteins API Documentation

  • Citations note on UniProt website

See also

Other "Deprecated functions": rba_uniprot_proteomics_search(), rba_uniprot_ptm(), rba_uniprot_ptm_search()

Examples

if (FALSE) { # \dontrun{
#Deprecated
rba_uniprot_proteomics(accession = "P25942")
} # }