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Get UniParc Longest Sequence for Entries

Source: R/uniprot_uniparc.R
rba_uniprot_uniparc_bestguess.Rd

This function returns the UniParc Entry with a cross-reference to the longest active UniProtKB sequence (preferably from Swiss-Prot and if not then TrEMBL). If it finds more than one longest active UniProtKB sequence it returns 400 (Bad Request) error response with the list of cross references found.

Usage

rba_uniprot_uniparc_bestguess(
  upi = NULL,
  accession = NULL,
  db_id = NULL,
  gene = NULL,
  taxid = NULL,
  ...
)

Arguments

upi

Character: (optional) Unique UniParc identifier(s). You can supply up to 100 IDs.

accession

Character: (optional) UniProtKB primary or secondary accession(s). You can supply up to 100 accession numbers.

db_id

Character: (optional) Protein ID in a cross-reference database. You can supply up to 100 IDs.

gene

Character: (optional) UniProt gene name(s). You can supply up to 20 gene names.

taxid

Numeric: (optional) NIH-NCBI Taxon ID used to refine the search. You can supply up to 20 taxon IDs.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

The best matching UniParc entry.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/uniparc/bestguess"

References

  • The UniProt Consortium. (2025). UniProt: the Universal Protein Knowledgebase in 2025. Nucleic Acids Research, 53(D1), D609–D617. https://doi.org/10.1093/nar/gkae1010

  • Nightingale, A., Antunes, R., Alpi, E., Bursteinas, B., Gonzales, L., Liu, W., Luo, J., Qi, G., Turner, E., & Martin, M. (2017). The Proteins API: Accessing key integrated protein and genome information. Nucleic Acids Research, 45(W1), W539–W544. https://doi.org/10.1093/nar/gkx237

  • Proteins API Documentation

  • Citations note on UniProt website

See also

Other "UniProt - UniParc": rba_uniprot_uniparc(), rba_uniprot_uniparc_search(), rba_uniprot_uniparc_sequence()

Examples

# \donttest{
rba_uniprot_uniparc_bestguess("UPI00000000C9")
# }