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Get UniParc Longest Sequence for Entries

Source: R/uniprot_uniparc.R
rba_uniprot_uniparc_bestguess.Rd

This function returns the UniParc Entry with a cross-reference to the longest active UniProtKB sequence (preferably from Swiss-Prot and if not then TrEMBL). If it finds more than one longest active UniProtKB sequence it returns 400 (Bad Request) error response with the list of cross references found.

Usage

rba_uniprot_uniparc_bestguess(
  upi = NULL,
  accession = NULL,
  db_id = NULL,
  gene = NULL,
  taxid = NULL,
  ...
)

Arguments

upi

unique UniParc Identifier.

accession

UniProtKB primary or secondary accession(s). You can supply up to 100 accession numbers.

db_id

Protein ID in the cross-reference (external) database. You can supply up to 100 IDs.

gene

UniProt gene name(s). You can supply up to 20 gene names.

taxid

NIH-NCBI Taxon ID. You can supply up to 20 taxon IDs.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list where each element correspond to a UniParc entry.

Corresponding API Resources

"GET https://ebi.ac.uk/proteins/api/uniparc/bestguess"

References

  • The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100

  • Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

  • Proteins API Documentation

  • Citations note on UniProt website

See also

Other "UniProt - UniParc": rba_uniprot_uniparc(), rba_uniprot_uniparc_search(), rba_uniprot_uniparc_sequence()

Examples

# \donttest{
rba_uniprot_uniparc_bestguess("UPI00000000C9")
# }