Get natural variants in UniProt by NIH-NCBI SNP database identifierSource:
Retrieve natural variant annotations of a sequence using UniProt protein accession, dbSNP or HGVS expression.
rba_uniprot_variation( id, id_type, source_type = NULL, consequence_type = NULL, wild_type = NULL, alternative_sequence = NULL, location = NULL, save_peff = FALSE, ... )
Variation's source type. You can choose up to two of: "UniProt", "large scale study" and/or "mixed".
Variation's consequence type. You can choose up to two of: "missense", "stop gained" or "stop lost".
Wild type amino acid. Accepted values are IUPAC single-letter amino acid (e.g. D for Aspartic acid) and "*" for stop codon. You can supply up to 20 values.
Alternative amino acid. Accepted values are IUPAC single-letter amino acid (e.g. D for Aspartic acid) and "*" for stop codon and "-" for deletion. You can supply up to 20 values.
A valid amino acid range (e.g. 10-25) within the sequence range where the variation occurs. You can supply up to 20 values.
Logical or Character:
FALSE: (default) Do not save PEFF file, just return as a list object.
TRUE: Save as PEFF file to an automatically-generated path.
Character string: A valid file path to save the PEFF file.
rbioapi option(s). See
rba_options's arguments manual for more information on available options.
The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Other "UniProt - Variation":