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Import Saved Analysis JSON to Reactome

Source: R/reactome_analysis.R
rba_reactome_analysis_import.Rd

If you have a JSON file of analysis results (only obtained via rba_reactome_analysis_download with the result argument set to "results", or "results_gz"), you can import the results back to Reactome and retrieve a token.
This is useful when you want to use other Reactome services which require a token but you do not have a token or your token has been expired (i.e. more than 7 days passed from your analysis).

Usage

rba_reactome_analysis_import(input, input_format = NULL, ...)

Arguments

input

Character: A local file path or URL that points to your -optionally gzipped- JSON file.

input_format

Character: (optional) This function will automatically identify your supplied input's format. But in case of unexpected issues or if you want to be explicit, set this argument to one of:

  • "file": If you supplied a local file path pointing to the JSON file.

  • "url": If you supplied a URL pointing to the JSON file.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list containing the new token and other information of your imported results.

Corresponding API Resources

"POST https://reactome.org/AnalysisService/import/"
"POST https://reactome.org/AnalysisService/import/url"

References

  • Ragueneau, E., Gong, C., Sinquin, P., Sevilla, C., Beavers, D., Grentner, A., ... D’Eustachio, P. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Res., 54(D1), D673–D681. doi: 10.1093/nar/gkaf1223

  • Griss J, Viteri G, Sidiropoulos K, Nguyen V, Fabregat A, Hermjakob H. ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis. Mol Cell Proteomics. 2020 Sep 9. doi: 10.1074/mcp. PubMed PMID: 32907876.

  • Reactome Analysis Services API Documentation

  • Citations note on Reactome website

See also

Other "Reactome Analysis Service": rba_reactome_analysis(), rba_reactome_analysis_download(), rba_reactome_analysis_mapping(), rba_reactome_analysis_pdf(), rba_reactome_analysis_species(), rba_reactome_analysis_token()

Examples

if (FALSE) { # \dontrun{
rba_reactome_analysis_import("c:/rbioapi/res.json")
} # }
if (FALSE) { # \dontrun{
rba_reactome_analysis_import("https://qaz.com/res.json.gz")
} # }