The interface From Reactome to PSICQUIC
Source:R/reactome_content.R
rba_reactome_interactors_psicquic.Rd
You can call this function in two scenarios: 1- To retrieve information of all available PSICQUIC resources, call the function without providing any argument; i.e rba_reactome_interactors_psicquic(). 2-To retrieve a list of interactors of specific protein(s), fill out the function's arguments.
Arguments
- proteins
Proteins to retrieve PSICQUIC interactors.
- resource
The PSICQUIC resource for your supplied proteins. Call rba_reactome_interactors_psicquic() without argument to get the available options.
- details
Logical: If TRUE (default) a detailed list of interactors will be returned. If FALSE, only a summary of available interactors will be returned.
- ...
rbioapi option(s). See
rba_options
's arguments manual for more information on available options.
Value
Depending your input, a list containing the detailed or summary of PSICQUIC interactions or a data frame of all registered PSICQUIC resources.
Corresponding API Resources
"POST https://reactome.org/ContentService/interactors/psicquic/molecules/
{resource}/details"
"POST https://reactome.org/ContentService/interactors/psicquic/molecules/
{resource}/summary"
"GET https://reactome.org/ContentService/interactors/psicquic/resources"
References
Marc Gillespie, Bijay Jassal, Ralf Stephan, Marija Milacic, Karen Rothfels, Andrea Senff-Ribeiro, Johannes Griss, Cristoffer Sevilla, Lisa Matthews, Chuqiao Gong, Chuan Deng, Thawfeek Varusai, Eliot Ragueneau, Yusra Haider, Bruce May, Veronica Shamovsky, Joel Weiser, Timothy Brunson, Nasim Sanati, Liam Beckman, Xiang Shao, Antonio Fabregat, Konstantinos Sidiropoulos, Julieth Murillo, Guilherme Viteri, Justin Cook, Solomon Shorser, Gary Bader, Emek Demir, Chris Sander, Robin Haw, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio, The reactome pathway knowledgebase 2022, Nucleic Acids Research, 2021;, kab1028, https://doi.org/10.1093/nar/gkab1028
Griss J, Viteri G, Sidiropoulos K, Nguyen V, Fabregat A, Hermjakob H. ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis. Mol Cell Proteomics. 2020 Sep 9. doi: 10.1074/mcp. PubMed PMID: 32907876.
See also
Other "Reactome Content Service - Molecule Interactors":
rba_reactome_interactors_static()