Using this function you can search UniProt for available gene-centrics from proteomes. For more information, see What are proteomes? and Automatic gene-centric isoform mapping for eukaryotic reference proteome entries. You may also refine your search with modifiers upid, accession and gene. See "Arguments section" for more information.
Arguments
- upid
UniProt Proteome identifier (UPID). You can supply up to 100 UPIDs.
- accession
UniProtKB primary or secondary accession(s). You can supply up to 100 accession numbers.
- gene
unique gene identifier(s) found in MOD, Ensembl, Ensembl Genomes, OLN, ORF or UniProt Gene Name.
- ...
rbioapi option(s). See
rba_options
's arguments manual for more information on available options.
Details
Note that this is a search function. Thus, you are not required to fill every argument; You may use whatever combinations of arguments you see fit for your query.
References
The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
See also
Other "UniProt - Proteomes":
rba_uniprot_genecentric()
,
rba_uniprot_proteomes()
,
rba_uniprot_proteomes_search()