Search Gene-Centric Proteins

UniProt gene-centric protein groups organize related protein entries from a proteome by gene. Search these groups by proteome, accession, or gene identifier. For more information, see What are proteomes? and Automatic gene-centric isoform mapping for eukaryotic reference proteome entries.

Usage

rba_uniprot_genecentric_search(upid = NULL, accession = NULL, gene = NULL, ...)

Arguments

upid: Character: (optional) UniProt Proteome identifier (UPID). You can supply up to 100 UPIDs.
accession: Character: (optional) UniProtKB primary or secondary accession(s). You can supply up to 100 accession numbers.
gene: Character: (optional) Unique gene identifier(s) found in MOD, Ensembl, Ensembl Genomes, OLN, ORF or UniProt Gene Name.
...: rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list containing matching gene-centric protein groups.

Details

At least one search criterion is required.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/genecentric"

References

The UniProt Consortium. (2025). UniProt: the Universal Protein Knowledgebase in 2025. Nucleic Acids Research, 53(D1), D609–D617. https://doi.org/10.1093/nar/gkae1010
Nightingale, A., Antunes, R., Alpi, E., Bursteinas, B., Gonzales, L., Liu, W., Luo, J., Qi, G., Turner, E., & Martin, M. (2017). The Proteins API: Accessing key integrated protein and genome information. Nucleic Acids Research, 45(W1), W539–W544. https://doi.org/10.1093/nar/gkx237
Proteins API Documentation
Citations note on UniProt website

Examples

# \donttest{
rba_uniprot_genecentric_search(accession = "P59594")
# }
# \donttest{
rba_uniprot_genecentric_search(gene = "Spike")
# }
# \donttest{
rba_uniprot_genecentric_search(upid = "UP000000354")
# }