Search Gene-Centric Proteins

Using this function you can search UniProt for available gene-centrics from proteomes. For more information, see What are proteomes? and Automatic gene-centric isoform mapping for eukaryotic reference proteome entries. You may also refine your search with modifiers upid, accession and gene. See "Arguments section" for more information.

Usage

rba_uniprot_genecentric_search(upid = NULL, accession = NULL, gene = NULL, ...)

Arguments

upid: UniProt Proteome identifier (UPID). You can supply up to 100 UPIDs.
accession: UniProtKB primary or secondary accession(s). You can supply up to 100 accession numbers.
gene: unique gene identifier(s) found in MOD, Ensembl, Ensembl Genomes, OLN, ORF or UniProt Gene Name.
...: rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

a list containing gene-centric proteins search hits.

Details

Note that this is a search function. Thus, you are not required to fill every argument; You may use whatever combinations of arguments you see fit for your query.

Corresponding API Resources

"GET https://ebi.ac.uk/proteins/api/genecentric"

References

The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
Proteins API Documentation
Citations note on UniProt website

Examples

# \donttest{
rba_uniprot_genecentric_search(accession = "P59594")
# }
# \donttest{
rba_uniprot_genecentric_search(gene = "Spike")
# }
# \donttest{
rba_uniprot_genecentric_search(upid = "UP000000354")
# }