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Get UniProt Proteomics Metadata

Source: R/uniprot_proteomics.R
rba_uniprot_proteomics_species.Rd

Retrieve information on the available Species proteomics data sources in UniProt.

Usage

rba_uniprot_proteomics_species(...)

Arguments

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A data frame with the available species as rows, and the columns indicating the proteomics data sources, separated by three main data categories: PTM (Post-Translational Modification), non-PTM, and HPP (Human Proteome Project)

Details

UniProt categorizes proteomics data sources into three main data categories: PTM (Post-Translational Modification), non-PTM, and HPP (Human Proteome Project); each with corresponding API endpoints, and thus, rbioapi functions.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/proteomics/species"

References

  • The UniProt Consortium , UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research, 2024;, gkae1010, https://doi.org/10.1093/nar/gkae1010

  • Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

  • Proteins API Documentation

  • Citations note on UniProt website

See also

Other "UniProt - Proteomics": rba_uniprot_proteomics_hpp(), rba_uniprot_proteomics_hpp_search(), rba_uniprot_proteomics_non_ptm(), rba_uniprot_proteomics_non_ptm_search(), rba_uniprot_proteomics_ptm(), rba_uniprot_proteomics_ptm_search()

Examples

# \donttest{
  rba_uniprot_proteomics_species()
# }