Get UniProt Proteomics Metadata

Retrieve information on the available Species proteomics data sources in UniProt.

Usage

rba_uniprot_proteomics_species(...)

Arguments

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A data frame with the available species as rows, and the columns indicating the proteomics data sources, separated by three main data categories: PTM (Post-Translational Modification), non-PTM, and HPP (Human Proteome Project)

Details

UniProt categorizes proteomics data sources into three main data categories: PTM (Post-Translational Modification), non-PTM, and HPP (Human Proteome Project); each with corresponding API endpoints, and thus, rbioapi functions.

Corresponding API Resources

"GET https://www.ebi.ac.uk/proteins/api/proteomics/species"

References

• The UniProt Consortium. (2025). UniProt: the Universal Protein Knowledgebase in 2025. Nucleic Acids Research, 53(D1), D609–D617. https://doi.org/10.1093/nar/gkae1010

• Nightingale, A., Antunes, R., Alpi, E., Bursteinas, B., Gonzales, L., Liu, W., Luo, J., Qi, G., Turner, E., & Martin, M. (2017). The Proteins API: Accessing key integrated protein and genome information. Nucleic Acids Research, 45(W1), W539–W544. https://doi.org/10.1093/nar/gkx237

• Proteins API Documentation

• Citations note on UniProt website

See also

Other "UniProt - Proteomics": rba_uniprot_proteomics_hpp(), rba_uniprot_proteomics_hpp_search(), rba_uniprot_proteomics_non_ptm(), rba_uniprot_proteomics_non_ptm_search(), rba_uniprot_proteomics_ptm(), rba_uniprot_proteomics_ptm_search()

Examples

# \donttest{
  rba_uniprot_proteomics_species()
# }