Prior to perform enrichment, Enrichr requires you to upload your gene-list and retrieve a 'user list ID'.

rba_enrichr_add_list(gene_list, description = NULL, organism = "human", ...)

Arguments

gene_list

A vector with Entrez gene symbols.

description

(optional) A name or description to be associated with your uploaded gene-set to Enrichr servers.

organism

(default = "human") Which model organism version of Enrichr to use? Available options are: "human", (H. sapiens & M. musculus), "fly" (D. melanogaster), "yeast" (S. cerevisiae), "worm" (C. elegans) and "fish" (D. rerio).

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list with two unique IDs for your uploaded gene sets.

Details

Note that using rba_enrichr is a more convenient way to automatically perform this and other required function calls to enrich your input gene-set.

Corresponding API Resources

"POST https://maayanlab.cloud/Enrichr/addList"

References

  • Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma'ayan A. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics. 2013;128(14).

  • Kuleshov MV, Jones MR, Rouillard AD, Fernandez NF, Duan Q, Wang Z, Koplev S, Jenkins SL, Jagodnik KM, Lachmann A, McDermott MG, Monteiro CD, Gundersen GW, Ma'ayan A. Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. Nucleic Acids Research. 2016; gkw377.

  • Enrichr API Documentation

See also

Examples

# \donttest{
rba_enrichr_add_list(gene_list = c("TP53", "TNF", "EGFR"),
     description = "tumoral genes")
# }