This function will search the gene and retrieve a list of Enrichr Terms that contains that gene.

rba_enrichr_gene_map(gene, catagorize = FALSE, organism = "human", ...)

Arguments

gene

character: An Entrez gene symbol.

catagorize

logical: Should the category informations be included?

organism

(default = "human") Which model organism version of Enrichr to use? Available options are: "human", (H. sapiens & M. musculus), "fly" (D. melanogaster), "yeast" (S. cerevisiae), "worm" (C. elegans) and "fish" (D. rerio).

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

a list containing the search results of your supplied gene.

Corresponding API Resources

"GET https://maayanlab.cloud/Enrichr/genemap"

References

  • Chen EY, Tan CM, Kou Y, Duan Q, Wang Z, Meirelles GV, Clark NR, Ma'ayan A. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. BMC Bioinformatics. 2013;128(14).

  • Kuleshov MV, Jones MR, Rouillard AD, Fernandez NF, Duan Q, Wang Z, Koplev S, Jenkins SL, Jagodnik KM, Lachmann A, McDermott MG, Monteiro CD, Gundersen GW, Ma'ayan A. Enrichr: a comprehensive gene set enrichment analysis web server 2016 update. Nucleic Acids Research. 2016; gkw377.

  • Enrichr API Documentation

See also

Examples

# \donttest{
rba_enrichr_gene_map(gene = "p53")
# }
# \donttest{
rba_enrichr_gene_map(gene = "p53", catagorize = TRUE)
# }