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This function will search the gene and retrieve a list of Enrichr Terms that contains that gene.

Usage

rba_enrichr_gene_map(gene, catagorize = FALSE, organism = "human", ...)

Arguments

gene

character: An Entrez gene symbol.

catagorize

logical: Should the category informations be included?

organism

(default = "human") Which model organism version of Enrichr to use? Available options are: "human", (H. sapiens & M. musculus), "fly" (D. melanogaster), "yeast" (S. cerevisiae), "worm" (C. elegans) and "fish" (D. rerio).

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

a list containing the search results of your supplied gene.

Corresponding API Resources

"GET https://maayanlab.cloud/Enrichr/genemap"

References

  • Chen, E.Y., Tan, C.M., Kou, Y. et al. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. Bioinformatics 14, 128 (2013). https://doi.org/10.1186/1471-2105-14-128

  • Maxim V. Kuleshov, Matthew R. Jones, Andrew D. Rouillard, Nicolas F. Fernandez, Qiaonan Duan, Zichen Wang, Simon Koplev, Sherry L. Jenkins, Kathleen M. Jagodnik, Alexander Lachmann, Michael G. McDermott, Caroline D. Monteiro, Gregory W. Gundersen, Avi Ma’ayan, Enrichr: a comprehensive gene set enrichment analysis web server 2016 update, Nucleic Acids Research, Volume 44, Issue W1, 8 July 2016, Pages W90–W97, https://doi.org/10.1093/nar/gkw377

  • Xie, Z., Bailey, A., Kuleshov, M. V., Clarke, D. J. B., Evangelista, J. E., Jenkins, S. L., Lachmann, A., Wojciechowicz, M. L., Kropiwnicki, E., Jagodnik, K. M., Jeon, M., & Ma’ayan, A. (2021). Gene set knowledge discovery with Enrichr. Current Protocols, 1, e90. doi: https://doi.org/10.1002/cpz1.90

  • Enrichr API Documentation

  • Citations note on Enrichr website

Examples

# \donttest{
rba_enrichr_gene_map(gene = "p53")
# }
# \donttest{
rba_enrichr_gene_map(gene = "p53", catagorize = TRUE)
# }