This function will retrieve a list of available libraries in Enrichr with their statistics. And by default, will save those names as a global option ("rba_enrichr_libs") to be available for other Enrichr functions that internally require the names of Enrichr libraries.
Arguments
- store_in_options
logical: (default = TRUE) Should a list of available Enrichr libraries be saved as a global option?
- organism
(default = "human") Which model organism version of Enrichr to use? Available options are: "human", (H. sapiens & M. musculus), "fly" (D. melanogaster), "yeast" (S. cerevisiae), "worm" (C. elegans) and "fish" (D. rerio).
- ...
rbioapi option(s). See
rba_options
's arguments manual for more information on available options.
Details
You should call this function once per R session with the argument
'store_in_options = TRUE' before using rba_enrichr_enrich
or rba_enrichr
.
Nevertheless, rbioapi will do this for you in the background at the
first time you call any function which requires this.
Note that using rba_enrichr
is a more convenient way to
automatically perform this and other required function calls to enrich
your input gene-set.
References
Chen, E.Y., Tan, C.M., Kou, Y. et al. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. Bioinformatics 14, 128 (2013). https://doi.org/10.1186/1471-2105-14-128
Maxim V. Kuleshov, Matthew R. Jones, Andrew D. Rouillard, Nicolas F. Fernandez, Qiaonan Duan, Zichen Wang, Simon Koplev, Sherry L. Jenkins, Kathleen M. Jagodnik, Alexander Lachmann, Michael G. McDermott, Caroline D. Monteiro, Gregory W. Gundersen, Avi Ma’ayan, Enrichr: a comprehensive gene set enrichment analysis web server 2016 update, Nucleic Acids Research, Volume 44, Issue W1, 8 July 2016, Pages W90–W97, https://doi.org/10.1093/nar/gkw377
Xie, Z., Bailey, A., Kuleshov, M. V., Clarke, D. J. B., Evangelista, J. E., Jenkins, S. L., Lachmann, A., Wojciechowicz, M. L., Kropiwnicki, E., Jagodnik, K. M., Jeon, M., & Ma’ayan, A. (2021). Gene set knowledge discovery with Enrichr. Current Protocols, 1, e90. doi: 10.1002/cpz1.90
See also
Other "Enrichr":
rba_enrichr()
,
rba_enrichr_add_list()
,
rba_enrichr_enrich()
,
rba_enrichr_gene_map()
,
rba_enrichr_view_list()