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View an Uploaded Gene List

Source: R/enrichr.R
rba_enrichr_view_list.Rd

Retrieve the list of uploaded genes with a given 'user list ID'.

Usage

rba_enrichr_view_list(
  user_list_id,
  organism = "human",
  speedrichr = FALSE,
  ...
)

Arguments

user_list_id

a user list ID returned after uploading a gene list using rba_enrichr_add_list

organism

(default = "human") Which model organism version of Enrichr to use? Available options are: "human", (H. sapiens & M. musculus), "fly" (D. melanogaster), "yeast" (S. cerevisiae), "worm" (C. elegans) and "fish" (D. rerio).

speedrichr

logical (default = FALSE) Did you upload your gene list to speedrichr API? (i.e. did you intend to use this gene list along with a background gene list?)

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list containing the genes and description associated to the supplied user_list_id.

Corresponding API Resources

"GET https://maayanlab.cloud/Enrichr/view"

References

  • Chen, E.Y., Tan, C.M., Kou, Y. et al. Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool. Bioinformatics 14, 128 (2013). https://doi.org/10.1186/1471-2105-14-128

  • Maxim V. Kuleshov, Matthew R. Jones, Andrew D. Rouillard, Nicolas F. Fernandez, Qiaonan Duan, Zichen Wang, Simon Koplev, Sherry L. Jenkins, Kathleen M. Jagodnik, Alexander Lachmann, Michael G. McDermott, Caroline D. Monteiro, Gregory W. Gundersen, Avi Ma’ayan, Enrichr: a comprehensive gene set enrichment analysis web server 2016 update, Nucleic Acids Research, Volume 44, Issue W1, 8 July 2016, Pages W90–W97, https://doi.org/10.1093/nar/gkw377

  • Xie, Z., Bailey, A., Kuleshov, M. V., Clarke, D. J. B., Evangelista, J. E., Jenkins, S. L., Lachmann, A., Wojciechowicz, M. L., Kropiwnicki, E., Jagodnik, K. M., Jeon, M., & Ma’ayan, A. (2021). Gene set knowledge discovery with Enrichr. Current Protocols, 1, e90. doi: 10.1002/cpz1.90

  • Enrichr API Documentation

  • Citations note on Enrichr website

See also

Other "Enrichr": rba_enrichr(), rba_enrichr_add_background(), rba_enrichr_add_list(), rba_enrichr_enrich(), rba_enrichr_gene_map(), rba_enrichr_libs()

Examples

if (FALSE) { # \dontrun{
rba_enrichr_view_list(user_list_id = 11111)
} # }