This function will retrieve a list of complexes that include your supplied molecule as a component.

rba_reactome_complex_list(id, resource, ...)

Arguments

id

Molecule's external Identifier

resource

What is the resource of your supplied ID? see: Reactome External Identifiers

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

Data frame where each row is a complex containing your supplied molecule and columns are pertinent information.

Corresponding API Resources

"GET https://reactome.org/ContentService/data/complexes/resource/ identifier"

References

  • Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, Sidiropoulos K, Cook J, Gillespie M, Haw R, Loney F, May B, Milacic M, Rothfels K, Sevilla C, Shamovsky V, Shorser S, Varusai T, Weiser J, Wu G, Stein L, Hermjakob H, D'Eustachio P. The reactome pathway knowledgebase. Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031. PubMed PMID: 31691815.

  • Reactome Content Services API Documentation

See also

Other "Reactome Content Service - Physical Entity Queries": rba_reactome_complex_subunits(), rba_reactome_entity_other_forms(), rba_reactome_participant_of()

Examples

# \donttest{
rba_reactome_complex_list(id = "3845", resource = "NCBI Gene")
# }
# \donttest{
rba_reactome_complex_list(id = "P00533", resource = "UniProt")
# }