This function will return a list of subunits which are participants of your supplied complex.

rba_reactome_complex_subunits(complex_id, exclude_structures = FALSE, ...)

Arguments

complex_id

Reactome stable Identifier of the complex.

exclude_structures

(logical) Should the contained complexes and entity sets be excluded from the results? (default = FALSE)

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

Data frame which each row is a subunit of your supplied complex and the columns are pertinent information of that subunit.

Details

Subunits will be returned recursively; Which means that if a subunit was itself a complex, subunit of that complex will be also returned in the results.

Corresponding API Resources

"GET https://reactome.org/ContentService/data/complex/id/subunits"

References

  • Jassal B, Matthews L, Viteri G, Gong C, Lorente P, Fabregat A, Sidiropoulos K, Cook J, Gillespie M, Haw R, Loney F, May B, Milacic M, Rothfels K, Sevilla C, Shamovsky V, Shorser S, Varusai T, Weiser J, Wu G, Stein L, Hermjakob H, D'Eustachio P. The reactome pathway knowledgebase. Nucleic Acids Res. 2020 Jan 8;48(D1):D498-D503. doi: 10.1093/nar/gkz1031. PubMed PMID: 31691815.

  • Reactome Content Services API Documentation

See also

Other "Reactome Content Service - Physical Entity Queries": rba_reactome_complex_list(), rba_reactome_entity_other_forms(), rba_reactome_participant_of()

Examples

# \donttest{
rba_reactome_complex_subunits(complex_id = "R-HSA-5674003",
    exclude_structures = FALSE)
# }
# \donttest{
rba_reactome_complex_subunits(complex_id = "R-HSA-109783",
    exclude_structures = TRUE)
# }