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Get a Complex's Subunits

Source: R/reactome_content.R
rba_reactome_complex_subunits.Rd

This function will return a list of subunits which are participants of your supplied complex.

Usage

rba_reactome_complex_subunits(complex_id, exclude_structures = FALSE, ...)

Arguments

complex_id

Character: Reactome stable Identifier of the complex.

exclude_structures

Logical: (default = FALSE) Should the contained complexes and entity sets be excluded from the results?

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

Data frame which each row is a subunit of your supplied complex and the columns are pertinent information of that subunit.

Details

Subunits will be returned recursively; Which means that if a subunit was itself a complex, subunit of that complex will be also returned in the results.

Corresponding API Resources

"GET https://reactome.org/ContentService/data/complex/{id}/subunits"

References

  • Ragueneau, E., Gong, C., Sinquin, P., Sevilla, C., Beavers, D., Grentner, A., ... D’Eustachio, P. (2026). The Reactome Knowledgebase 2026. Nucleic Acids Res., 54(D1), D673–D681. doi: 10.1093/nar/gkaf1223

  • Griss, J., Viteri, G., Sidiropoulos, K., Nguyen, V., Fabregat, A., & Hermjakob, H. (2020). ReactomeGSA—Efficient Multi-Omics Comparative Pathway Analysis. Molecular & Cellular Proteomics, 19(12), 2115–2125. doi: 10.1074/mcp.TIR120.002155

  • Reactome Content Services API Documentation

  • Citations note on Reactome website

See also

Other "Reactome Content Service - Physical Entity Queries": rba_reactome_complex_list(), rba_reactome_entity_other_forms(), rba_reactome_participant_of()

Examples

# \donttest{
rba_reactome_complex_subunits(complex_id = "R-HSA-5674003",
    exclude_structures = FALSE)
# }