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Get Other forms of a Reactome Entity

Source: R/reactome_content.R
rba_reactome_entity_other_forms.Rd

This function retrieve a list containing all other forms of your supplied Physical Entity ID.

Usage

rba_reactome_entity_other_forms(entity_id, ...)

Arguments

entity_id

Reactome's entity ID.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

Data frame where each row is other forms of your supplied Entity ID and columns are pertinent information.

Details

According to Reactome API documentation, "These other forms are Physical Entities that share the same Reference Entity identifier, e.g. PTEN H93R R-HSA-2318524 and PTEN C124R R-HSA-2317439 are two forms of PTEN."

Corresponding API Resources

"GET https://reactome.org/ContentService/data/entity/{id}/otherForms"

References

  • Marc Gillespie, Bijay Jassal, Ralf Stephan, Marija Milacic, Karen Rothfels, Andrea Senff-Ribeiro, Johannes Griss, Cristoffer Sevilla, Lisa Matthews, Chuqiao Gong, Chuan Deng, Thawfeek Varusai, Eliot Ragueneau, Yusra Haider, Bruce May, Veronica Shamovsky, Joel Weiser, Timothy Brunson, Nasim Sanati, Liam Beckman, Xiang Shao, Antonio Fabregat, Konstantinos Sidiropoulos, Julieth Murillo, Guilherme Viteri, Justin Cook, Solomon Shorser, Gary Bader, Emek Demir, Chris Sander, Robin Haw, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio, The reactome pathway knowledgebase 2022, Nucleic Acids Research, 2021;, kab1028, https://doi.org/10.1093/nar/gkab1028

  • Griss J, Viteri G, Sidiropoulos K, Nguyen V, Fabregat A, Hermjakob H. ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis. Mol Cell Proteomics. 2020 Sep 9. doi: 10.1074/mcp. PubMed PMID: 32907876.

  • Reactome Content Services API Documentation

  • Citations note on Reactome website

See also

Other "Reactome Content Service - Physical Entity Queries": rba_reactome_complex_list(), rba_reactome_complex_subunits(), rba_reactome_participant_of()

Examples

# \donttest{
rba_reactome_entity_other_forms("R-HSA-199420")
# }