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Get Larger Reactome Structures Which Include an Entity

Source: R/reactome_content.R
rba_reactome_participant_of.Rd

This function will retrieve a list of complexes and sets that Your supplied entity ID participates in (e.g. as a complex component, reaction output).

Usage

rba_reactome_participant_of(entity_id, ...)

Arguments

entity_id

Reactome's entity ID.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

List of Reactome database Entities which Your supplied ID is a participant in them.

Corresponding API Resources

"GET https://reactome.org/ContentService/data/entity/{id}/componentOf"

References

  • Marc Gillespie, Bijay Jassal, Ralf Stephan, Marija Milacic, Karen Rothfels, Andrea Senff-Ribeiro, Johannes Griss, Cristoffer Sevilla, Lisa Matthews, Chuqiao Gong, Chuan Deng, Thawfeek Varusai, Eliot Ragueneau, Yusra Haider, Bruce May, Veronica Shamovsky, Joel Weiser, Timothy Brunson, Nasim Sanati, Liam Beckman, Xiang Shao, Antonio Fabregat, Konstantinos Sidiropoulos, Julieth Murillo, Guilherme Viteri, Justin Cook, Solomon Shorser, Gary Bader, Emek Demir, Chris Sander, Robin Haw, Guanming Wu, Lincoln Stein, Henning Hermjakob, Peter D’Eustachio, The reactome pathway knowledgebase 2022, Nucleic Acids Research, 2021;, kab1028, https://doi.org/10.1093/nar/gkab1028

  • Griss J, Viteri G, Sidiropoulos K, Nguyen V, Fabregat A, Hermjakob H. ReactomeGSA - Efficient Multi-Omics Comparative Pathway Analysis. Mol Cell Proteomics. 2020 Sep 9. doi: 10.1074/mcp. PubMed PMID: 32907876.

  • Reactome Content Services API Documentation

  • Citations note on Reactome website

See also

rba_reactome_participants

Other "Reactome Content Service - Physical Entity Queries": rba_reactome_complex_list(), rba_reactome_complex_subunits(), rba_reactome_entity_other_forms()

Examples

# \donttest{
rba_reactome_participant_of(entity_id = "R-HSA-199420")
# }