Get Lowest Common Ancestor (LCA) of Two Taxonomy Nodes
Source:R/uniprot_taxonomy.R
rba_uniprot_taxonomy_lca.Rd
Use this function to retrieve lowest common ancestor (LCA) of two taxonomy nodes in UniProt Taxonomy database
Arguments
- ids
(numeric) Numeric vector of NCBI taxonomic identifiers, with minimum length of two.
- ...
rbioapi option(s). See
rba_options
's arguments manual for more information on available options.
References
The UniProt Consortium , UniProt: the Universal Protein Knowledgebase in 2025, Nucleic Acids Research, 2024;, gkae1010, https://doi.org/10.1093/nar/gkae1010
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237
See also
Other "UniProt - Taxonomy":
rba_uniprot_taxonomy()
,
rba_uniprot_taxonomy_lineage()
,
rba_uniprot_taxonomy_name()
,
rba_uniprot_taxonomy_path()
,
rba_uniprot_taxonomy_relationship()
Examples
# \donttest{
rba_uniprot_taxonomy_lca(c(9606,10090,9823,7712))
# }