Use this function to retrieve lowest common ancestor (LCA) of two taxonomy nodes in UniProt Taxonomy database

rba_uniprot_taxonomy_lca(ids, ...)

Arguments

ids

(numeric) Numeric vector of NCBI taxonomic identifiers, with minimum length of two.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list with UniProt taxonomy information of your supplied taxonomy elements.

Corresponding API Resources

"GET https://ebi.ac.uk/proteins/api/ancestor/ids"

References

  • Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

  • Proteins API Documentation

See also

Examples

# \donttest{
rba_uniprot_taxonomy_lca(c(9606,10090,9823,7712))
# }