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Get Shortest Path Between Two Taxonomy Nodes

Source: R/uniprot_taxonomy.R
rba_uniprot_taxonomy_relationship.Rd

Use this function to retrieve the shortest path between two nodes in the taxonomy tree of UniProt Taxonomy database.

Usage

rba_uniprot_taxonomy_relationship(from, to, ...)

Arguments

from

NCBI taxonomic identifier of your initial node.

to

NCBI taxonomic identifier of your final node.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

a nested list containing the node which are in the shortest path between your supplied nodes.

Corresponding API Resources

"GET https://ebi.ac.uk/proteins/api/relationship"

References

  • The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100

  • Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

  • Proteins API Documentation

  • Citations note on UniProt website

See also

Other "UniProt - Taxonomy": rba_uniprot_taxonomy(), rba_uniprot_taxonomy_lca(), rba_uniprot_taxonomy_lineage(), rba_uniprot_taxonomy_name(), rba_uniprot_taxonomy_path()

Examples

# \donttest{
rba_uniprot_taxonomy_relationship(from = 9606, to = 10090)
# }