Traverse UniProt Taxonomic Tree PathSource:
Using this function you can retrieve nodes that are located in the top or the bottom of your supplied node in UniProt Taxonomy database tree
(numeric) a NCBI taxonomic identifier
direction of the taxonomic path, either "TOP" or "BOTTOM".
(numeric) How many levels should be traversed on the taxonomic tree? (from 1 to 5, default = 5)
rbioapi option(s). See
rba_options's arguments manual for more information on available options.
a nested list containing the node which are in the path specified by your supplied argument in the UniProt taxonomic tree.
The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100
Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237