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Get Taxonomic Lineage

Source: R/uniprot_taxonomy.R
rba_uniprot_taxonomy_lineage.Rd

Use this function to retrieve the taxonomic lineage of your supplied taxonomy node.

Usage

rba_uniprot_taxonomy_lineage(id, ...)

Arguments

id

(numeric) a NCBI taxonomic identifier

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list with a data frame containing All the nodes that preceded your supplied node in the taxonomic tree. with your node as the first row and the root node in the last row.

Corresponding API Resources

"GET https://ebi.ac.uk/proteins/api/lineage/{id}"
"GET https://ebi.ac.uk/proteins/api/lineage/{id}"

References

  • The UniProt Consortium, UniProt: the universal protein knowledgebase in 2021, Nucleic Acids Research, Volume 49, Issue D1, 8 January 2021, Pages D480–D489, https://doi.org/10.1093/nar/gkaa1100

  • Andrew Nightingale, Ricardo Antunes, Emanuele Alpi, Borisas Bursteinas, Leonardo Gonzales, Wudong Liu, Jie Luo, Guoying Qi, Edd Turner, Maria Martin, The Proteins API: accessing key integrated protein and genome information, Nucleic Acids Research, Volume 45, Issue W1, 3 July 2017, Pages W539–W544, https://doi.org/10.1093/nar/gkx237

  • Proteins API Documentation

  • Citations note on UniProt website

See also

Other "UniProt - Taxonomy": rba_uniprot_taxonomy(), rba_uniprot_taxonomy_lca(), rba_uniprot_taxonomy_name(), rba_uniprot_taxonomy_path(), rba_uniprot_taxonomy_relationship()

Examples

# \donttest{
rba_uniprot_taxonomy_lineage(id = 9989)
# }