List collections available in JASPAR

JASPAR organizes matrix profiles into collections. Using this function, you can retrieve a list of available collections in a JASPAR release.

Usage

rba_jaspar_collections(release = 2022, ...)

Arguments

release

Numeric: (default = 2022) Which JASPAR database release to use? Available options are: 2014, 2016, 2018, 2020, and 2022.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A data frame with collections' names and URLs.

Corresponding API Resources

"GET "https://jaspar.genereg.net/api/v1/collections/"

References

• Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez, Oriol Fornes, Tiffany Y Leung, Alejandro Aguirre, Fayrouz Hammal, Daniel Schmelter, Damir Baranasic, Benoit Ballester, Albin Sandelin, Boris Lenhard, Klaas Vandepoele, Wyeth W Wasserman, François Parcy, Anthony Mathelier, JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles, Nucleic Acids Research, Volume 50, Issue D1, 7 January 2022, Pages D165–D173, https://doi.org/10.1093/nar/gkab1113

• JASPAR API Documentation

• Citations note on JASPAR website

See also

Other "JASPAR": rba_jaspar_collections_matrices(), rba_jaspar_matrix_search(), rba_jaspar_matrix_versions(), rba_jaspar_matrix(), rba_jaspar_releases(), rba_jaspar_sites(), rba_jaspar_species_matrices(), rba_jaspar_species(), rba_jaspar_taxons_matrices(), rba_jaspar_taxons(), rba_jaspar_tffm_search(), rba_jaspar_tffm()

Examples

# \donttest{
rba_jaspar_collections(release = 2022)
# }