JASPAR organizes matrix profiles from multiple species in six taxonomic groups. Use this function to retrieve a list of available species in a JASPAR database release.
Arguments
- release
Numeric: (default = 2022) Which JASPAR database release to use? Available options are: 2014, 2016, 2018, 2020, and 2022.
- search
Character: A search term.
- order
Character: A character string or a vector of character strings of field names that will be used to order the results.
Providing multiple field names is supported. You can also use prefix "-" before a field name to indicate reverse ordering.- ...
rbioapi option(s). See
rba_options's arguments manual for more information on available options.
References
Jaime A Castro-Mondragon, Rafael Riudavets-Puig, Ieva Rauluseviciute, Roza Berhanu Lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez, Oriol Fornes, Tiffany Y Leung, Alejandro Aguirre, Fayrouz Hammal, Daniel Schmelter, Damir Baranasic, Benoit Ballester, Albin Sandelin, Boris Lenhard, Klaas Vandepoele, Wyeth W Wasserman, François Parcy, Anthony Mathelier, JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles, Nucleic Acids Research, Volume 50, Issue D1, 7 January 2022, Pages D165–D173, https://doi.org/10.1093/nar/gkab1113
See also
Other "JASPAR":
rba_jaspar_collections_matrices(),
rba_jaspar_collections(),
rba_jaspar_matrix_search(),
rba_jaspar_matrix_versions(),
rba_jaspar_matrix(),
rba_jaspar_releases(),
rba_jaspar_sites(),
rba_jaspar_species_matrices(),
rba_jaspar_taxons_matrices(),
rba_jaspar_taxons(),
rba_jaspar_tffm_search(),
rba_jaspar_tffm()