JASPAR organizes matrix profiles from multiple species in multiple taxonomic groups. Use this function to retrieve a list of available species in a JASPAR database release.
Arguments
- release
Numeric: (default = 2026) Which JASPAR database release to use? Available options are: 2026, 2024, 2022, 2020, 2018, 2016, and 2014.
- search
Character: A search term.
- order
Character: A character string or a vector of character strings of field names that will be used to order the results.
Providing multiple field names is supported. You can also use the prefix "-" before a field name to indicate reverse ordering.- ...
rbioapi option(s). See
rba_options's arguments manual for more information on available options.
References
Baydar Ovek D, et al. JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models. Nucleic Acids Res. 2026;54(D1):D184-D193; doi: 10.1093/nar/gkaf1209
Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804
See also
Other "JASPAR":
rba_jaspar_collections(),
rba_jaspar_collections_matrices(),
rba_jaspar_matrix(),
rba_jaspar_matrix_search(),
rba_jaspar_matrix_versions(),
rba_jaspar_releases(),
rba_jaspar_sites(),
rba_jaspar_species_matrices(),
rba_jaspar_taxons(),
rba_jaspar_taxons_matrices(),
rba_jaspar_tffm(),
rba_jaspar_tffm_search()