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Get information about a TF flexible model (TFFM)

Source: R/jaspar.R
rba_jaspar_tffm.Rd

Using this function, you can retrieve details and annotations for the transcription factor flexible model (TFFM) associated with a TFFM ID. If a base ID (i.e., without a version suffix) is supplied, the latest version will be returned.

Usage

rba_jaspar_tffm(tffm_id, ...)

Arguments

tffm_id

Character: A TF flexible model (TFFM) identifier.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list that contains the TFFM's information and annotations.

Corresponding API Resources

"GET https://jaspar.elixir.no/api/v1/tffm/{tffm_id}/"

References

  • Baydar Ovek D, et al. JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models. Nucleic Acids Res. 2026;54(D1):D184-D193; doi: 10.1093/nar/gkaf1209

  • Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804

  • JASPAR API Documentation

  • Citations note on JASPAR website

See also

Other "JASPAR": rba_jaspar_collections(), rba_jaspar_collections_matrices(), rba_jaspar_matrix(), rba_jaspar_matrix_search(), rba_jaspar_matrix_versions(), rba_jaspar_releases(), rba_jaspar_sites(), rba_jaspar_species(), rba_jaspar_species_matrices(), rba_jaspar_taxons(), rba_jaspar_taxons_matrices(), rba_jaspar_tffm_search()

Examples

# \donttest{
rba_jaspar_tffm("TFFM0056.3")
# }