Using this function you can retrieve details and annotations of Transcription Factor flexible models (TFFMs) associated with a TFFM ID. If a base ID (i.e. without version suffix) was supplied, the latest version will be returned.

rba_jaspar_tffm(tffm_id, ...)

Arguments

tffm_id

Character: A TF flexible model (TFFM) Identifier.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list that contains the TFFM's information and annotations.

Corresponding API Resources

"GET "http://jaspar.genereg.net/api/v1/fttm/tffm_id/"

References

  • Fornes O, Castro-Mondragon JA, Khan A, et al. JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 2019; doi: 10.1093/nar/gkz1001

  • Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804

  • Khan, A. et al. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. 2018; 46:D260–D266, doi: 10.1093/nar/gkx1126

  • JASPAR API Documentation

See also

Examples

# \donttest{
rba_jaspar_tffm("TFFM0056.3")
# }