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Get binding sites of a matrix profile

Source: R/jaspar.R
rba_jaspar_sites.Rd

Use this function to retrieve a list of transcription factor binding sites associated with a matrix profile.

Usage

rba_jaspar_sites(matrix_id, ...)

Arguments

matrix_id

Character: A matrix profile identifier. It follows a "base_id.version" naming scheme.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list containing a data frame with binding-site information.

Corresponding API Resources

"GET https://jaspar.elixir.no/api/v1/sites/{matrix_id}/"

References

  • Baydar Ovek D, et al. JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models. Nucleic Acids Res. 2026;54(D1):D184-D193; doi: 10.1093/nar/gkaf1209

  • Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804

  • JASPAR API Documentation

  • Citations note on JASPAR website

See also

Other "JASPAR": rba_jaspar_collections(), rba_jaspar_collections_matrices(), rba_jaspar_matrix(), rba_jaspar_matrix_search(), rba_jaspar_matrix_versions(), rba_jaspar_releases(), rba_jaspar_species(), rba_jaspar_species_matrices(), rba_jaspar_taxons(), rba_jaspar_taxons_matrices(), rba_jaspar_tffm(), rba_jaspar_tffm_search()

Examples

# \donttest{
rba_jaspar_sites("MA0600.1")
# }