Use this function to retrieve a list of transcription factor binding sites associated with a matrix profile.

rba_jaspar_sites(matrix_id, ...)

Arguments

matrix_id

Character: A matrix profile Identifier. It has "base_id.version" naming schema.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A list that contains a data frame with binding sites information.

Corresponding API Resources

"GET "http://jaspar.genereg.net/api/v1/sites/matrix_id/"

References

  • Fornes O, Castro-Mondragon JA, Khan A, et al. JASPAR 2020: update of the open-access database of transcription factor binding profiles. Nucleic Acids Res. 2019; doi: 10.1093/nar/gkz1001

  • Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804

  • Khan, A. et al. JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework. Nucleic Acids Res. 2018; 46:D260–D266, doi: 10.1093/nar/gkx1126

  • JASPAR API Documentation

See also

Examples

# \donttest{
rba_jaspar_sites("MA0600.1")
# }