List available taxonomic groups in JASPAR

JASPAR organizes matrix profiles from multiple species in multiple taxonomic groups. Use this function to retrieve a list of available taxonomic groups in a JASPAR database release.

Usage

rba_jaspar_taxons(release = 2026, ...)

Arguments

release

Numeric: (default = 2026) Which JASPAR database release to use? Available options are: 2026, 2024, 2022, 2020, 2018, 2016, and 2014.

...

rbioapi option(s). See rba_options's arguments manual for more information on available options.

Value

A data frame with information on available taxonomic groups.

Corresponding API Resources

"GET https://jaspar.elixir.no/api/v1/taxon/"

References

• Baydar Ovek D, et al. JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models. Nucleic Acids Res. 2026;54(D1):D184-D193; doi: 10.1093/nar/gkaf1209

• Khan, A. and Mathelier, A. JASPAR RESTful API: accessing JASPAR data from any programming language. Bioinformatics, 2017, doi: 10.1093/bioinformatics/btx804

• JASPAR API Documentation

• Citations note on JASPAR website

See also

Other "JASPAR": rba_jaspar_collections(), rba_jaspar_collections_matrices(), rba_jaspar_matrix(), rba_jaspar_matrix_search(), rba_jaspar_matrix_versions(), rba_jaspar_releases(), rba_jaspar_sites(), rba_jaspar_species(), rba_jaspar_species_matrices(), rba_jaspar_taxons_matrices(), rba_jaspar_tffm(), rba_jaspar_tffm_search()

Examples

# \donttest{
rba_jaspar_taxons(release = 2026)
# }